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#pyneuroml

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Ankur Sinha "FranciscoD"<p><a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a> supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (<a href="https://fosstodon.org/tags/pyNeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pyNeuroML</span></a>, <a href="https://fosstodon.org/tags/neuroConstruct" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroConstruct</span></a>, <a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEURON</span></a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NetPyNE</span></a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNN</span></a>, <a href="https://fosstodon.org/tags/N2A" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>N2A</span></a>), validating (pyNeuroML, <a href="https://fosstodon.org/tags/OMV" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OMV</span></a>, <a href="https://fosstodon.org/tags/SciUnit" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SciUnit</span></a>), visualising (pyNeuroML, <a href="https://fosstodon.org/tags/OSB" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OSB</span></a>, <a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a>-DB), simulating (<a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEURON</span></a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NetPyNE</span></a>, <a href="https://fosstodon.org/tags/Brian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Brian</span></a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNN</span></a>, <a href="https://fosstodon.org/tags/NEST" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEST</span></a>, <a href="https://fosstodon.org/tags/MOOSE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MOOSE</span></a>, <a href="https://fosstodon.org/tags/EDEN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EDEN</span></a>), model fitting/optimisation (<a href="https://fosstodon.org/tags/NeuroTune" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroTune</span></a>, <a href="https://fosstodon.org/tags/BluePyOpt" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BluePyOpt</span></a>, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, <a href="https://fosstodon.org/tags/NeuroMorpho" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroMorpho</span></a>.org). 7/x</p>
Ankur Sinha "FranciscoD"<p>The latest release of <a href="https://fosstodon.org/tags/PyNeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNeuroML</span></a>, 1.3.9, includes `pynml-swc2nml` for conversion of <a href="https://fosstodon.org/tags/SWC" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SWC</span></a> neuronal morphologies to <a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a>. Also accessible via the API:</p><p><a href="https://pyneuroml.readthedocs.io/en/development/pyneuroml.swc.html#pyneuroml.swc.ExportNML.convert_swc_to_neuroml" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">pyneuroml.readthedocs.io/en/de</span><span class="invisible">velopment/pyneuroml.swc.html#pyneuroml.swc.ExportNML.convert_swc_to_neuroml</span></a></p><p>Install it using pip:</p><p><a href="https://pypi.org/project/pyNeuroML/1.3.9/" rel="nofollow noopener noreferrer" translate="no" target="_blank"><span class="invisible">https://</span><span class="ellipsis">pypi.org/project/pyNeuroML/1.3</span><span class="invisible">.9/</span></a></p><p><a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a> <a href="https://fosstodon.org/tags/ComputationalNeuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>ComputationalNeuroscience</span></a> <a href="https://fosstodon.org/tags/NeuronalModelling" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuronalModelling</span></a> <a href="https://fosstodon.org/tags/FAIR" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>FAIR</span></a> <a href="https://fosstodon.org/tags/Neuroscience" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Neuroscience</span></a> <a href="https://fosstodon.org/tags/AcademicChatter" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>AcademicChatter</span></a></p>
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