Continued thread
Raj's dashboard, updated this morning, shows Stratus XFG overtaken by child XFG.2; PQ.2 as standout child of Nimbus NB.1.8.1 / PQ; and LP.8.1 long ago overshadowed by LP.8.1.1/ NY.
GISAID data for the most recent fortnight is dominated by submissions from New York (with all of 91 sequences), followed by Florida (with 17), Colorado and California (both 16).
#CDC's most recent Friday dataset, updated Tuesday June 24, showed Nimbus taking plurality, with Stratus XFG family also gaining share.
FDA vaccine target LP.8.1, dominant since March, plateaued in April. June saw Nimbus NB.1.8.1 / PQ, scion of "razor-blade throat" XDV, push LP.8.1 out of majority.
❖ #ThisIsOurPolio #variants #CovidIsNotOver #dataviz #datavis
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Jun 8–21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all Omicron-2 BA.2 dynasty. WHO-Vaccine-Target JN.1 family accounts for well over half share; Nimbus NB.1.8.1 / PQ for over two fifths.
For 6/22–7/5, estimates make up for outdated CDC Nowcast, with leading sequences from GISAID. Packed bubble charts fill single-variant tiles.
Legend:
LF.7 + NTD-meets-RBD [browns]:
52% - XFG.2†, XFG.3† & other Stratus XFG
2% - XFC
1% - other LF.7 + NTD-meets-RBD
JN.1.11 + FLiRT31-LP [purple]:
19% - LP.8.1.1 / NY†, NY.3† & other FDA-Vaccine-Target LP.8.1
Omicron-2 BA.2 [green]:
15% - PQ.2† & other Nimbus NB.1.8.1 / PQ
JN.1 + FLiRT-LF-7 [reds]:
⅝% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
4% - other LF.7
JN.1.11 [blues]:
⅘% - other KP.3.1.1 / MC
0% - other JN.1.11
Other [greys]:
½% - other XEC
⅝% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
WHO-Vaccine-Target JN.1 is a grandchild of Winter 2024's Pirola BA.2.86.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/925/130/567/838/231/original/43d5f7ccc2154822.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Jun 8–21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all Omicron-2 BA.2 dynasty. WHO-Vaccine-Target JN.1 family accounts for well over half share; Nimbus NB.1.8.1 / PQ for over two fifths.
For 6/22–7/5, estimates make up for outdated CDC Nowcast, with leading sequences from GISAID. Packed bubble charts fill single-variant tiles.
Legend:
LF.7 + NTD-meets-RBD [browns]:
51% - XFG.2†, XFG.3† & other Stratus XFG
⅔% - XFC
1% - other LF.7 + NTD-meets-RBD
Omicron-2 BA.2 [green]:
18% - PQ.2† & other Nimbus NB.1.8.1 / PQ
JN.1.11 + FLiRT31-LP [purple]:
18% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
JN.1 + FLiRT-LF-7 [reds]:
⅔% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
5% - other LF.7
JN.1.11 [blues]:
⅞% - other KP.3.1.1 / MC
0% - other JN.1.11
Other [greys]:
⅞% - other XEC
⁸⁄₉% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
WHO-Vaccine-Target JN.1 is a grandchild of Winter 2024's Pirola BA.2.86.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/893/511/817/479/395/original/17788fe2ea9b8599.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 6/8–6/21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
WHO-Vaccine-Target JN.1 family accounts for well over half. Nimbus NB.1.8.1 / PQ for over two fifths share.
For 6/8–6/21, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
Omicron-2 BA.2 [green]:
43% - PQ.2† & other Nimbus NB.1.8.1 / PQ
JN.1.11 + FLiRT31-LP [purple]:
31% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
LF.7 + NTD-meets-RBD [browns]:
14% - XFG.2†, XFG.3† & other Stratus XFG
5% - XFC
0% - other LF.7 + NTD-meets-RBD
JN.1 + FLiRT-LF-7 [reds]:
4% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
⅗% - LF.7.2.1 / PC & other LF.7
JN.1.11 [blues]:
⅓% - KP.3, XEQ & XEK
1% - PA.1, MC.10.1, MC.1 & other KP.3.1.1 / MC
Other [greys]:
⅕% - LB.1.3.1 / NL
1% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/839/567/042/215/152/original/591e58d16825bc90.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 6/8–6/21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all Omicron-2 BA.2 dynasty. WHO-Vaccine-Target JN.1 family accounts for well over half share; Nimbus NB.1.8.1 / PQ for over two fifths.
For 6/8–6/21, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
Omicron-2 BA.2 [green]:
43% - PQ.2† & other Nimbus NB.1.8.1 / PQ
JN.1.11 + FLiRT31-LP [purple]:
31% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
LF.7 + NTD-meets-RBD [browns]:
14% - XFG.2†, XFG.3† & other Stratus XFG
5% - XFC
JN.1 + FLiRT-LF-7 [reds]:
4% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
⅗% - LF.7.2.1 / PC & other LF.7
JN.1.11 [blues]:
⁹⁄₁₀% - PA.1 & MC.10.1
⅓% - KP.3, XEQ & XEK
⅐% - MC.1 & other KP.3.1.1 / MC
Other [greys]:
⅕% - LB.1.3.1 / NL
1% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/838/419/571/616/598/original/50a9972eaa20fabb.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 6/8–6/21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all Omicron-2 BA.2 dynasty. WHO-Vaccine-Target JN.1 family accounts for well over half share; Nimbus NB.1.8.1 / PQ for over two fifths.
For 6/8–6/21, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
Omicron-2 BA.2 [green]:
43% - PQ.2† & other Nimbus NB.1.8.1 / PQ
JN.1.11 + FLiRT31-LP [purple]:
31% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
LF.7 + NTD-meets-RBD [browns]:
14% - XFG.2†, XFG.3† & other Stratus XFG
5% - XFC
JN.1 + FLiRT-LF-7 [reds]:
4% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
⅗% - LF.7.2.1 / PC & other LF.7
JN.1.11 [blues]:
⁹⁄₁₀% - PA.1 & MC.10.1
⅓% - KP.3, XEQ & XEK
⅐% - MC.1 & other KP.3.1.1 / MC
Other [greys]:
⅕% - LB.1.3.1 / NL
1% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/788/166/162/549/367/original/dbb5e5adf5eb92a3.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Jun 8–21. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all Omicron-2 BA.2 dynasty. WHO-Vaccine-Target JN.1 family accounts for well over half share; Nimbus NB.1.8.1 / PQ for over two fifths.
For 5/25–6/7, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
Omicron-2 BA.2 [green]:
43% - Nimbus NB.1.8.1 / PQ
JN.1.11 + FLiRT31-LP [purple]:
31% - LP.8.1.1 / NY†, NW.1† & other FDA-Vaccine-Target LP.8.1
LF.7 + NTD-meets-RBD [browns]:
14% - XFG.2†, XFG.3† & other Stratus XFG
5% - XFC
JN.1 + FLiRT-LF-7 [reds]:
4% - LF.7.9, LF.7.7.2 & LF.7.7.1 / PV
⅗% - LF.7.2.1 / PC & other LF.7
JN.1.11 [blues]:
⁹⁄₁₀% - PA.1 & MC.10.1
⅓% - KP.3, XEQ & XEK
⅐% - MC.1 & other KP.3.1.1 / MC
Other [greys]:
⅕% - LB.1.3.1 / NL
1% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/760/435/310/033/658/original/cf3f5aebef28bac2.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/25–6/7. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
WHO-Vaccine-Target JN.1 accounts for over three fifths. JN.1.11 for over two fifths.
For 5/25–6/7, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [blues]:
38% - LP.8.1.1 / NY†, NW.1† & other FDA-Vaccine-Target LP.8.1
⅛% - XEK
Omicron-2 BA.2 [purple]:
37% - Nimbus NB.1.8.1 / PQ
LF.7 + NTD-meets-RBD [browns]:
8% - XFG.2†, XFG.3† & other Stratus XFG
7% - XFC
JN.1 + FLiRT-LF-7 [reds]:
5% - LF.7.9 & LF.7.7.2
1% - LF.7.7.1 / PV & other LF.7
JN.1.11 [greens]:
⅜% - KP.3 & XEQ
1% - PA.1, MC.10.1, MC.1 & other KP.3.1.1 / MC
Other [greys]:
½% - LB.1.3.1 / NL
2% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
XDE was a child of left-field Hyperion grandkid FL.13.4 and left-field Hippogryph scion GW.5.1.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/725/905/084/858/047/original/0641e8e79dfff8f4.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/25–6/7. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
WHO-Vaccine-Target JN.1 accounts for over three fifths. JN.1.11 for over two fifths.
For 5/11–5/24, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [blues]:
38% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
⅛% - XEK
Omicron-2 BA.2 [purple]:
37% - Nimbus NB.1.8.1 / PQ
LF.7 + NTD-meets-RBD [browns]:
8% - XFG.2† & other Stratus XFG
7% - XFC
0% - XFJ†
JN.1 + FLiRT-LF-7 [reds]:
5% - LF.7.9 & LF.7.7.2
1% - LF.7.7.1 / PV & other LF.7
JN.1.11 [greens]:
⅜% - KP.3 & XEQ
1% - PA.1, MC.10.1, MC.1 & other KP.3.1.1 / MC
Other [greys]:
½% - LB.1.3.1 / NL
2% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
XDE was a child of left-field Hyperion grandkid FL.13.4 and left-field Hippogryph scion GW.5.1.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/686/495/040/114/089/original/a2515c4f9e353b94.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/25–6/7. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
WHO-Vaccine-Target JN.1 accounts for over three fifths. JN.1.11 for over two fifths.
For 5/11–5/24, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [blues]:
38% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
⅛% - XEK
Omicron-2 BA.2 [purple]:
37% - Nimbus NB.1.8.1 / PQ
LF.7 + NTD-meets-RBD [browns]:
8% - XFG.2† & other XFG
7% - XFC
JN.1 + FLiRT-LF-7 [reds]:
5% - LF.7.7.2, LF.7.9.1 / PY† & other LF.7.9
1% - LF.7.7.1 / PV & other LF.7
JN.1.11 [greens]:
⅜% - KP.3 & XEQ
1% - PA.1, MC.10.1, MC.1 & other KP.3.1.1 / MC
Other [greys]:
½% - LB.1.3.1 / NL
2% - XEC.4 & other XEC
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
XDE was a child of left-field Hyperion grandkid FL.13.4 and left-field Hippogryph scion GW.5.1.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/669/808/594/238/896/original/8dcb6b528065ca7f.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/25–6/7. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
For 5/11–5/24, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purples]:
38% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
⅛% - XEK
Omicron-2 BA.2 [red]:
37% - Nimbus NB.1.8.1 / PQ
JN.1 + FLiRT-LF [browns]:
8% - XFG.2† & other XFG
7% - XFC
4% - LF.7.9.1 / PY† & other LF.7.9
1% - LF.7.7.2 & LF.7.7.1 / PV
⁹⁄₁₀% - other LF.7
WHO-Vaccine-Target JN.1 [green]:
2% - XEC, LB.1.3.1 / NL & XEC.4
JN.1.11 [blues]:
⅜% - KP.3 & XEQ
1% - PA.1, MC.10.1, MC.1 & other KP.3.1.1 / MC
Other [grey]:
0% - Other (not specified)
_____
Nimbus NB.1.8.1 / PQ is a scion of left-field Razor-Blade-Throat XDV.
Razor-Blade-Throat XDV was a child of Winter 2024's WHO-Vaccine-Target JN.1 and left-field recombinant XDE.
XDE was a child of left-field Hyperion grandkid FL.13.4 and left-field Hippogryph scion GW.5.1.
XFG is a child of April's JN.1.16.1 kid LF.7 and newish FLiRT31 cluster LP.8.1.2.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/664/284/772/672/541/original/ac66836d1f5905a1.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/11–5/24. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
For 5/11–5/24, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
73% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
JN.1 + FLiRT-LF [browns]:
10% - XFC
3% - LF.7.7.2
2% - XFG.2†, XFG†, LF.7.9.1 / PY† & other LF.7
1% - LF.7.7.1 / PV & LF.7.2.1 / PC
WHO-Vaccine-Target JN.1 [red]:
6% - XEC, LB.1.3.1 / NL & XEC.4
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
¾% - KP.3 & XEQ
⅞% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
¼% - XEK
Other [greys]:
0% - XFP† & other WHO-Vaccine-Target JN.1
0% - Nimbus NB.1.8.1 / PQ† & Other (not specified)
_____
XFC is a child of April's JN.1.16.1 kid LF.7 and newish FLiRT31 cluster LP.8.1.1.
XFG is a child of April's JN.1.16.1 kid LF.7 and newish FLiRT31 cluster LP.8.1.2.
XFP is a child of April's JN.1.16.1 kid LF.7 and left-field FLiRT cluster LS.2.1.1.
[Some footnotes omitted, due to too many recombinants.]](https://spaces.hcommons.social/media_attachments/files/114/641/109/552/924/442/original/d534ae4cac84d683.jpg)
![Chart: Est. U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 5/11–5/24. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
For 4/27–5/10, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
73% - LP.8.1.1 / NY† & other FDA-Vaccine-Target LP.8.1
JN.1 + FLiRT-LF [browns]:
10% - XFC
3% - LF.7.7.2
2% - XFG.2†, XFG†, LF.7.9† & other LF.7
1% - LF.7.7.1 & LF.7.2.1 / PC
WHO-Vaccine-Target JN.1 [red]:
6% - XEC, LB.1.3.1 / NL, XEC.4, XEC.4.1† & XFJ†
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
¾% - KP.3 & XEQ
⅞% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
¼% - XEK
Other [greys]:
0% - Razor-Blade-Throat NB.1.8.1 / PQ† & other WHO-Vaccine-Target JN.1
0% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and JN.1.16.1 scion LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and JN.1.16.1 scion LF.7.
[Add'l footnotes omitted.]](https://spaces.hcommons.social/media_attachments/files/114/582/113/385/770/718/original/5596d4047c6944a2.jpg)
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: CDC, Cov-Lineages, NYITCOM, D. Focosi, WHN, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through 4/27–5/10. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
LP.8.1 accounts for over two thirds.
For 4/13–4/26, packed bubble charts fill single-variant tiles, reflecting GISAID detail not shown by CDC's Nowcast.
Legend:
JN.1.11 + FLiRT31 [purple]:
70% - LP.8.1.1 / NY†, LP.8.1.8† & other LP.8.1
JN.1 + FLiRT-LF [browns]:
9% - XFC
3% - LF.7.7.2
2% - XFG† & other LF.7
2% - LF.7.7.1 & LF.7.2.1 / PC
JN.1 + FLiRT [reds]:
2% - LB.1.3.1 / NL
1% - XEC.4
½% - XEQ
6% - other XEC
JN.1.11 [greens]:
3% - MC.10.1 & PA.1
⅓% - KP.3
2% - MC.1, MC.19 & other KP.3.1.1 / MC
JN.1.11 + FLiRT31 [blue]:
⅓% - XEK
Other [greys]:
⅐% - NB.1.8.1†, JN.1.16 & other WHO-Vaccine-Target JN.1
⅒% - Other (not specified)
_____
XEC is a child of FLiRT cluster KS.1.1 and FLuQE cluster KP.3.3.
XEK is a child of FLiRT31 cluster KP.2.3 and recombinant XEC.
XEQ is a child of FLiRT cluster KS.1.1.2 and FLuQE cluster KP.3.
XFC is a child of FLiRT31 cluster LP.8.1.1 and FLiRT cluster LF.7.
XFG is a child of FLiRT31 cluster LP.8.1.2 and FLiRT cluster LF.7.
[Add'l footnotes omitted.]](https://spaces.hcommons.social/media_attachments/files/114/491/756/859/809/463/original/6834a1b3b7cd3deb.jpg)
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through April 13–26. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over two thirds; JN.1 + FLiRT for near a quarter.
For fortnight of 3/30–4/12, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
69% - LP.8.1.1 / NY† & other LP.8.1
JN.1 + FLiRT-KS [browns]:
1% - XEC.4
¾% - XEQ
10% - other XEC
JN.1 + FLiRT [reds]:
6% - LF.7.7.2
4% - LF.7.7.1, LF.7 & LF.7.2.1 / PC
2% - LB.1.3.1 / NL
JN.1.11 [greens]:
3% - MC.10.1, MC.28.1 & MC.19
2% - PA.1
½% - KP.3
2% - MC.1 & other KP.3.1.1 / MC
XEK [blue]:
⅜% - XEK
Other [greys]:
⅙% - JN.1.16
⅒% - NB.1† & other WHO-Vaccine-Target JN.1
¼% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/410/379/035/209/452/original/9439ad7e47d8ab14.jpg)
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through Mar 30–Apr 12. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for over three fifths; JN.1 + FLiRT for near a quarter.
For fortnight of 3/16–3/29, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
64% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
2% - XEC.4
15% - other XEC
JN.1.11 + FLuQE [greens]:
5% - MC.10.1 & MC.19
1% - MC.28.1
2% - XEQ & other KP.3
3% - MC.1 & other KP.3.1.1 / MC
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
¾% - LF.7.2.1 / PC
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3
Other [greys]:
⅓% - JN.1.16
⅒% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variant is not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/333/759/840/925/358/original/cfec2b797658b166.jpg)
![Chart: Estimated U.S. Variant Proportions by Common Name
Sources: Centers for Disease Control, CoV-Lineages, NYITCOM Research, Daniele Focosi, World Health Network, others
[ beadsland on Ko-fi ]
Reskin of CDC's Variants Nowcast, and any significant variants in GISAID not broken out by CDC.
Five bar-style tree-charts, for fortnights through March 16–29. Legend of last fortnight, organized by subheadings of color-grouped families and convergent clusters. Percentages overlay each color key, reflecting share as of most recent tree-chart.
Essentially all WHO-Vaccine-Target JN.1. LP.8.1 accounts for well over half; JN.1 + FLiRT for over a quarter.
For fortnight of 3/2–3/15, packed bubble charts fill single-variant tiles, indicating diversification of those variants (per GISAID) that wouldn't otherwise be apparent from CDC's Nowcast.
Legend:
LP.8.1 [purple]:
55% - LP.8.1.1 / NY† & other LP.8.1
XEC [browns]:
21% - XEC.2† & other XEC
2% - XEC.4
JN.1.11 + FLuQE [greens]:
6% - MC.10.1 & MC.19
3% - MC.28.1
2% - XEQ
4% - MC.1 & other KP.3.1.1 / MC
⅘% - other KP.3
JN.1 + FLiRT [reds]:
4% - LF.7
2% - LB.1.3.1 / NL
JN.1.11 + FLiRT [blues]:
½% - XEK
0% - KP.2.3 & KP.1.1.3 / LP
Other [greys]:
⅖% - JN.1.16
⅙% - other WHO-Vaccine-Target JN.1
0% - Other (not specified)
† Dagger variants are not broken out by CDC, yet represent a significant share of recent GISAID sequences.](https://spaces.hcommons.social/media_attachments/files/114/259/915/273/763/471/original/d43e9777e86ef6a8.jpg)
