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#netpyne

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Ankur Sinha "FranciscoD"<p><a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a> supports all stages of the modelling life-cycle with a vast ecosystem of software tools: creating (<a href="https://fosstodon.org/tags/pyNeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>pyNeuroML</span></a>, <a href="https://fosstodon.org/tags/neuroConstruct" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>neuroConstruct</span></a>, <a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEURON</span></a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NetPyNE</span></a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNN</span></a>, <a href="https://fosstodon.org/tags/N2A" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>N2A</span></a>), validating (pyNeuroML, <a href="https://fosstodon.org/tags/OMV" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OMV</span></a>, <a href="https://fosstodon.org/tags/SciUnit" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>SciUnit</span></a>), visualising (pyNeuroML, <a href="https://fosstodon.org/tags/OSB" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>OSB</span></a>, <a href="https://fosstodon.org/tags/NeuroML" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroML</span></a>-DB), simulating (<a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEURON</span></a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NetPyNE</span></a>, <a href="https://fosstodon.org/tags/Brian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Brian</span></a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNN</span></a>, <a href="https://fosstodon.org/tags/NEST" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEST</span></a>, <a href="https://fosstodon.org/tags/MOOSE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MOOSE</span></a>, <a href="https://fosstodon.org/tags/EDEN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EDEN</span></a>), model fitting/optimisation (<a href="https://fosstodon.org/tags/NeuroTune" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroTune</span></a>, <a href="https://fosstodon.org/tags/BluePyOpt" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>BluePyOpt</span></a>, NetPyNE), sharing and reusing of models (OSB, NeuroML-DB, <a href="https://fosstodon.org/tags/NeuroMorpho" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NeuroMorpho</span></a>.org). 7/x</p>
Ankur Sinha "FranciscoD"<p>A number of software tools are available for construction and simulation of models: <a href="https://fosstodon.org/tags/NEURON" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEURON</span></a>, <a href="https://fosstodon.org/tags/NetPyNE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NetPyNE</span></a>, <a href="https://fosstodon.org/tags/Brian" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>Brian</span></a>, <a href="https://fosstodon.org/tags/PyNN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>PyNN</span></a>, <a href="https://fosstodon.org/tags/NEST" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>NEST</span></a>, <a href="https://fosstodon.org/tags/MOOSE" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>MOOSE</span></a>, <a href="https://fosstodon.org/tags/EDEN" class="mention hashtag" rel="nofollow noopener noreferrer" target="_blank">#<span>EDEN</span></a> etc. These have their own features, styles, programming interfaces (APIs). This is great but it also means that researchers need to learn each of these individually to use them. It also means that tools and models developed for one don’t necessarily work for others and need to be manually converted. This is often a non-trivial task and limits model reuse. 3/x</p>
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